rs37676066 SNP Detail

Summary

• ID
  rs37676066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87828621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACCTGTT TTCCTCCTGC
  TCTAATGTTC ATGTACTCAC GTAATAACTC TCTTAAGTAC CTTCAGTGCC AAGGTCTCCT
  GAGATAGCTA GCAATCCAAG CTAGATAGTG TAGCCCCTGG TCTCGTGAGT TTTTTACTTA
  TAAGTCAGAT ATATGGGGGA GGGGGTTGAA TACAGATGTT CCCATGGATG GAAGATACAT
  Y
  ACCTCTTTGT TTTCTCATTT GTAAAGATAG CCTGTGAGGA GTGTCAGTGA GATGAAGTCC
  TCTACGAAAG AGAGTCAGTG CTTTAATAAC AGTCCTGGAG CTATATGGAG CTATATAGCT
  GGATATGGTG CTATACACCT TTAGTCCTGG CACTAGGGAA GGAGAGCGAA GGAGAAGGAT
  TTGTGAGTTC GAGGTCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51575516	NES14667326	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37676066					SNP	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575516	NES14667326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87828621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	1457 bp distal
Gm64606	predicted gene, 64606	1911 bp upstream
Mettl25b	methyltransferase like 25B	1287 bp downstream
Mrpl24	mitochondrial ribosomal protein L24	within coordinates
Rr367453	regulatory region 367453	1761 bp downstream
Rr579573	regulatory region 579573	1922 bp distal
Rr579574	regulatory region 579574	1741 bp distal
Rr579575	regulatory region 579575	1073 bp distal
Rr579576	regulatory region 579576	696 bp distal
Tssr29862	transcription start site region 29862	1817 bp downstream
Tssr29863	transcription start site region 29863	1788 bp downstream
Tssr29864	transcription start site region 29864	1756 bp downstream
Tssr29865	transcription start site region 29865	1738 bp downstream
Tssr29866	transcription start site region 29866	1637 bp downstream
Tssr29867	transcription start site region 29867	1601 bp downstream
Tssr29868	transcription start site region 29868	581 bp upstream