rs37681113 SNP Detail

Summary

• ID
  rs37681113
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69837901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCTTGG TGTCCGTTCC
  TCGCCTGTGA ACCCCGGAGG ACAGCAATTG CTCGGTGCTG CAGCTTCGAA AAATGAATGA
  GAGAGAGTGA GGCAATAGAG GGAGGCAGGA TGGCCTTCCC TCCCATGTAG TGGGGTCTTG
  GCGGTGCAGA GCCTGCTTTG ATTGCCTTGA CTCTTTCCCC AATCACCTTC TTATTGAACC
  K
  GTTTCAGTAC AGTGACAGTG GCAGTTGATG GATGCAGGAA ATCTTGAAAT AAGGATCGCA
  CAGACAGCCT CTACATTTTG TCAGCCCTTC CATCCCCTAT GCTAGGCGCC GAGGTGCTTG
  TGTGCTGGCG GCAGGGCTAC AGCAGAGAAA ACGCACGATG TGAAACCTGG CCAACCCGGG
  GCAAGGAACG TGCGATGCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51016665	NES14398526	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		G	T	G		T
ss324085701	CHEV_12_70892114	CHEVERUD	SCREENING_POP	f	SNP											G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37681113					SNP	T	T	T	T	T	T	T	T	T	T	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51016665	NES14398526	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69837901 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	within coordinates
Rr257091	regulatory region 257091	700 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	854 bp upstream
Tssr116528	transcription start site region 116528	851 bp upstream
Tssr116529	transcription start site region 116529	829 bp upstream
Tssr116530	transcription start site region 116530	496 bp upstream
Tssr116531	transcription start site region 116531	392 bp upstream
Tssr116532	transcription start site region 116532	102 bp downstream
Tssr116533	transcription start site region 116533	167 bp downstream
Tssr116534	transcription start site region 116534	184 bp downstream
Tssr116535	transcription start site region 116535	198 bp downstream
Tssr116536	transcription start site region 116536	226 bp downstream