rs37681806 SNP Detail

Summary

• ID
  rs37681806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129206680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGGGA GAGGGAGAGA
  GGGAGGGAGA GAGAGAGTTG AAGATCTCAT CTGTTCAAAA TTGCCAGACC TGAAGAAGGA
  GATCTTCTCA TTTATTCATC TATTTGCTGG GCTCATGTTG GATGAGAAGG ACAGGGGCTG
  TCTGTCGGAC TTTTTCCTCT TTAAGATTTG AACTAGCTTT CAGCTTCCAG TTGATGGTCA
  R
  CTGGGATCCT TAGAGGAAAA GCTATAATTA TCTACAGTCC ACATGTATAG AGTGGTCCTA
  GGTGATCTGA CATTAGCTGG CTAGTATGGC AGGCCTCAGT GAGAAAGCAT TCAGTTTCCA
  CTGAAATTTG GCTGGACAGC TATTGTGCGA TAAGCAGACT GTTAGGCAGA GGAAAAACAG
  TATCAGAAAG ATAACACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51418735	NES13703966	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs37681806					SNP	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51418735	NES13703966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129206680 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	1954 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	90 bp downstream
Tssr59119	transcription start site region 59119	334 bp downstream
Tssr59120	transcription start site region 59120	302 bp downstream
Tssr59121	transcription start site region 59121	785 bp upstream
Tssr59122	transcription start site region 59122	819 bp upstream
Tssr59123	transcription start site region 59123	878 bp upstream
Tssr63549	transcription start site region 63549	598 bp upstream
Tssr63550	transcription start site region 63550	472 bp upstream
Tssr63551	transcription start site region 63551	545 bp downstream