rs37682231 SNP Detail

Summary

• ID
  rs37682231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:27300225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCTTTG AGGGTAATGC
  CTAGGGCCCC AGTTTGCTGG CCTCTCTAAA ACAGTGCAGG GCAGTGTACT CTCCAGGGGC
  CATAGACAGG CAGGAGAGAT AGGCCAGGAA ACTGACTCCC ACCACCATGC TGAAACAGAG
  CAACGAGAGG AGATGGTCCT TGAGCTACAA GCCCTGGAGT ACCCCAGAGA CTGAGGATGT
  R
  CCCAACACTG GGAGCAACCA ACACCGCAGG AGCATCTGCT CCTTGGGAGC CCGCACTGGC
  TCTCAGGCCA GCATCGCACC ACAATGGACC GAGGGCAACT ACAATTACTA CATTGAGGAA
  GATGAGGACT GCGGGGAGGA GGGGGAGGAC TGGAAGGATG ATCTTGCCGA AGAGAATCAG
  AAGGCGGAGT GCCTCACAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50718275	NES13574372	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37682231					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718275	NES13574372	PERLEGEN	MM_PANEL	f	SNP	A/G
ss71641595	Kcnv2-239	MATINLAB-MDACC	Pools-1	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:27300225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10724	CpG island 10724	180 bp proximal
Gm35268	predicted gene, 35268	1096 bp downstream
Gm50114	predicted gene, 50114	within coordinates
Kcnv2	potassium channel, subfamily V, member 2	Coding-Synonymous
Rr545853	regulatory region 545853	803 bp proximal
Tssr5470	transcription start site region 5470	224 bp downstream
Tssr155737	transcription start site region 155737	1062 bp downstream
Tssr155738	transcription start site region 155738	293 bp downstream
Tssr155739	transcription start site region 155739	233 bp downstream
Tssr155740	transcription start site region 155740	208 bp downstream