rs37683970 SNP Detail

Summary

• ID
  rs37683970
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113285402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATTGGT GGTCCTAGGC
  ACTAGTTCAA ACTAGTCCTG AGAGAAATTG GAGCGGTACC AGACTAAGCT GGGCTCCCTG
  GGGTTTGGTG CCATCTGCTG TCTCTACTCA CCCAGAAACT GAGGTGGGGG AGGGTTAGCC
  TTTGAGAACC TTGGAACATA ATGCCTAGAT TTTTGTGATC ATGTTTGTGT CCTGGCATTC
  W
  GTAGGCCCTG AGTTAATGTT GCATGAATCA GTAAATGAGG AAACCAAGTG TAGCCTGTGC
  CGTTTGTCCT GCGGAAATGA CCATTTCACA AGGTTTCTCC CTATATCTCC CCACCCAGTT
  CCAGGGTGAG GTTCCCCATT AAGACTTCAG CGATGCACTG ATTGTGTAGT TCAATGGTTT
  CTGTTGGAAT CTAGGACTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51842510	NES14762350	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37683970					SNP	A	A	A	A	A	A	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842510	NES14762350	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113285402 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	within coordinates
Cpgi17838	CpG island 17838	406 bp distal
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	1767 bp upstream
Gm67816	predicted gene, 67816	536 bp upstream
Rr399829	regulatory region 399829	1768 bp downstream
Rr636484	regulatory region 636484	1002 bp distal
Rr636485	regulatory region 636485	547 bp distal
Rr636486	regulatory region 636486	46 bp distal
Rr636487	regulatory region 636487	95 bp distal
Tssr58189	transcription start site region 58189	1464 bp downstream
Tssr58190	transcription start site region 58190	1211 bp downstream
Tssr58191	transcription start site region 58191	1195 bp downstream
Tssr58192	transcription start site region 58192	580 bp downstream
Tssr58193	transcription start site region 58193	556 bp downstream
Tssr62434	transcription start site region 62434	655 bp upstream