rs37684457 SNP Detail

Summary

• ID
  rs37684457
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5847322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATAGATGT CTGCTGTTGT CAATGTTCCT GCATGTAAGA
  ATTAAGACCA AGGGAGGGGA GAGAGAACAC CTACACAAAG ATAATGCACT AAAGACCACG
  S
  AACTGTTCAA AACATTTCCA CTTGCCAGTT AAAATTTCTT CAAGAATGTT GCTTGTCTGA
  TTTATTTCTT GTCAGATTTT AAGTTGAATC TGGAAGAGAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577498	NES13649160	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37684457					SNP	G	G	G	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577498	NES13649160	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5847322 () rs orientation: forward

Symbol	Name	Function Class
Gm55521	predicted gene, 55521	1706 bp downstream
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	1313 bp upstream
Rr543161	regulatory region 543161	160 bp proximal
Rr543162	regulatory region 543162	1266 bp proximal
Tssr5415	transcription start site region 5415	428 bp upstream
Tssr5416	transcription start site region 5416	16 bp downstream
Tssr5417	transcription start site region 5417	1732 bp downstream
Tssr157645	transcription start site region 157645	913 bp upstream
Tssr157646	transcription start site region 157646	811 bp upstream
Tssr157647	transcription start site region 157647	724 bp upstream
Tssr157648	transcription start site region 157648	557 bp upstream
Tssr157649	transcription start site region 157649	465 bp upstream
Tssr157650	transcription start site region 157650	400 bp upstream
Tssr157651	transcription start site region 157651	330 bp upstream
Tssr157652	transcription start site region 157652	190 bp upstream
Tssr157653	transcription start site region 157653	106 bp upstream
Tssr157654	transcription start site region 157654	52 bp upstream
Tssr157655	transcription start site region 157655	26 bp upstream
Tssr157656	transcription start site region 157656	within coordinates
Tssr157657	transcription start site region 157657	116 bp downstream
Tssr157658	transcription start site region 157658	168 bp downstream
Tssr157659	transcription start site region 157659	271 bp downstream
Tssr157660	transcription start site region 157660	424 bp downstream
Tssr157661	transcription start site region 157661	445 bp downstream
Tssr157662	transcription start site region 157662	550 bp downstream
Tssr157663	transcription start site region 157663	609 bp downstream
Tssr157664	transcription start site region 157664	731 bp downstream
Tssr157665	transcription start site region 157665	738 bp downstream
Tssr157666	transcription start site region 157666	763 bp downstream
Tssr157667	transcription start site region 157667	1016 bp downstream
Tssr157668	transcription start site region 157668	1063 bp downstream
Tssr157669	transcription start site region 157669	1078 bp downstream
Tssr157670	transcription start site region 157670	1098 bp downstream
Tssr157671	transcription start site region 157671	1115 bp downstream
Tssr157672	transcription start site region 157672	1164 bp downstream
Tssr157673	transcription start site region 157673	1181 bp downstream
Tssr157674	transcription start site region 157674	1211 bp downstream
Tssr157675	transcription start site region 157675	1230 bp downstream
Tssr157676	transcription start site region 157676	1241 bp downstream
Tssr157677	transcription start site region 157677	1263 bp downstream
Tssr157678	transcription start site region 157678	1275 bp downstream
Tssr157679	transcription start site region 157679	1312 bp downstream
Tssr157680	transcription start site region 157680	1367 bp downstream
Tssr157681	transcription start site region 157681	1396 bp downstream
Tssr157682	transcription start site region 157682	1414 bp downstream
Tssr157683	transcription start site region 157683	1440 bp downstream
Tssr157684	transcription start site region 157684	1456 bp downstream
Tssr157685	transcription start site region 157685	1466 bp downstream
Tssr157686	transcription start site region 157686	1481 bp downstream
Tssr157687	transcription start site region 157687	1550 bp downstream
Tssr157688	transcription start site region 157688	1600 bp downstream
Tssr157689	transcription start site region 157689	1631 bp downstream
Tssr157690	transcription start site region 157690	1709 bp downstream
Tssr157691	transcription start site region 157691	1755 bp downstream
Tssr157692	transcription start site region 157692	1809 bp downstream
Tssr157693	transcription start site region 157693	1866 bp downstream
Tssr157694	transcription start site region 157694	1924 bp downstream
Tssr157695	transcription start site region 157695	1988 bp downstream