rs37685380 SNP Detail

Summary

• ID
  rs37685380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44399804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAATTGC AGTCAATTGT
  ATAATATTTT TTCCTATGGT ATCTTATCTA CATGTTTGCA TCTAGAATGT CTTAGAAAAT
  GAGAGAGGCT TTCTCTGCTT GCAATTTACA TTGCAATTCA GCCCACGCTT ACCTGCCCGA
  GCTCATTTGC TGACGGCTCA CCCACAGGGC TGTGGCTGTT TACCATCATC AGAGATGGCG
  Y
  GGCACTCGTC ATGGGCTCTG TTTGTGTATA TGGCATGAAT TTGCAAGTGC CAGAAGAGGG
  TGTCAGATCC CCTGGAGCTG AAGTTACAGG TGATGTGAGC CACCCATCAG ACTGGGGTGC
  TGGAGACTGA ATCTGGGTCC TCTGGAAGAA CAGTGCATTC TAAATCCCCG AGACCTCCAG
  CCTACCCTCG GAACTGACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	KK/HlJ
ss51890939	NES14914108	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	KK/HlJ
rs37685380					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51890939	NES14914108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44399804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18993	CpG island 18993	1334 bp distal
Rr400296	regulatory region 400296	1784 bp downstream
Tssr66420	transcription start site region 66420	1820 bp downstream
Tssr66421	transcription start site region 66421	1746 bp downstream
Tssr66422	transcription start site region 66422	1729 bp downstream
Tssr66423	transcription start site region 66423	1452 bp downstream
Tssr66424	transcription start site region 66424	1383 bp downstream
Vrk3	vaccinia related kinase 3	within coordinates
Zfp473	zinc finger protein 473	1763 bp upstream