rs37686172 SNP Detail

Summary

• ID
  rs37686172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGAGGG AAGTTCAGCC
  AATAAATAGT AGAGAACGGC CTGGACCTTA GTGTATCCAC CAATAAGAAA CTCGGGGTGT
  GTCTTCCAAG TTCACAGGGG GGAGGGTTTA AGCCGAGCAG ATGCTGGCCA ATGATCTTAG
  GGGCTGAGCT AATATTAACC AATCAGAGAG CCGATCTGAT ATCGGCACCG TTACTGGGGC
  R
  TGGCCTCTGA GCTCACGTCA GGAGAAGGCC CTTGGCCTTC CAATGTGGGT CTGGGGCAAA
  TTCTAGTCCT CCCAATCCCT GCTCGGCGCA GGCAATTCAA ACTGACAGCG GGTTAGAAAA
  AGCAGAGAAA GCGGAAGAAA GAGCAAAACC CGGCGTGTTC GCTGACTGAC TGCAGCGCGA
  ACTGAGCCTA TTCCGAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368046	NES14475972	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37686172					SNP	G	G	A	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368046	NES14475972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	59 bp upstream
Gm70877	predicted gene, 70877	156 bp downstream
Rr396286	regulatory region 396286	261 bp downstream
Rr396287	regulatory region 396287	within coordinates
Rr418129	regulatory region 418129	1210 bp distal
Rr418130	regulatory region 418130	1595 bp distal
Rr418131	regulatory region 418131	508 bp distal
Rr418132	regulatory region 418132	within coordinates
Rr418133	regulatory region 418133	290 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	492 bp upstream
Tssr8629	transcription start site region 8629	14 bp upstream
Tssr8630	transcription start site region 8630	57 bp upstream
Tssr8631	transcription start site region 8631	136 bp upstream
Tssr8632	transcription start site region 8632	517 bp upstream
Tssr13597	transcription start site region 13597	1997 bp upstream
Tssr13598	transcription start site region 13598	1296 bp upstream
Tssr13599	transcription start site region 13599	1254 bp upstream
Tssr13600	transcription start site region 13600	1099 bp upstream
Tssr13601	transcription start site region 13601	551 bp upstream
Tssr13602	transcription start site region 13602	459 bp upstream
Tssr13603	transcription start site region 13603	304 bp upstream