rs37693527 SNP Detail

Summary

• ID
  rs37693527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20369056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGACTGG CCGTGGGGAG GGAGTGTGAG CACGTGTGAA
  CTCCTGGGGA ATTTCTCCTT CCTCATGATA TCCTGGTTGC TATAGTGCAG ATCTATTTGT
  R
  ACACACAGAA AATGCTTTAA ATAAAAGCTA CTTCCTGACC ATGACTTCCT GGGCAATGTG
  TTCTTCCGGA GACTGTTGAA CGCCAAAGTT TACAAGCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51076127	NES14368649	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	A		G	A	A	G		G
ss324281238	CHEV_13_20276755	CHEVERUD	SCREENING_POP	f	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37693527					SNP	G	A	A	A	G	A	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076127	NES14368649	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20369056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	364 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	656 bp distal
Rr270988	regulatory region 270988	within coordinates
Rr270989	regulatory region 270989	745 bp proximal
Rr281054	regulatory region 281054	within coordinates
Rr403595	regulatory region 403595	177 bp upstream
Tssr118580	transcription start site region 118580	54 bp upstream
Tssr118581	transcription start site region 118581	112 bp upstream
Tssr118582	transcription start site region 118582	401 bp upstream
Tssr118583	transcription start site region 118583	436 bp upstream
Tssr118584	transcription start site region 118584	517 bp upstream
Tssr118585	transcription start site region 118585	530 bp upstream