rs37698896 SNP Detail

Summary

• ID
  rs37698896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTACCTC TGAGCTGTGT
  GGTTCCTAGG CTACCATGTC TACCATTGGG ACACTCTCTC TGCTAAGAGT TGTGCGGTTC
  TTGGGGTTCC ACACCTTCCT AGAAGGAACA TTTATAGCTT CTAATCTTAA AATAGACTCA
  GGCTGGTCCA TCACATGGAG AAGTTCAAGG GAGATCAAAT GGATACCGGG CACCATTTGA
  Y
  GGATTAGAAA AGCTAGGTCA CCACTGGCCT GCAGCCTAGC ACACTGAACG TCATCAAACA
  CGTATTCATT AAGGACTTTG CACTGTGATA CAGTGCAAAG ATGTGAACAA CAACAAAACT
  GTGCCTATAC TTAGCCAGCC CAGGCTGGAA GGGTGTGGAC TGAACTGGGA TTGCTTTGTC
  TGAGTGCACA GAAAGCATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51307141	NES13774486	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37698896					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51307141	NES13774486	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	521 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	68 bp downstream
Lrrc61	leucine rich repeat containing 61	862 bp upstream
Rr399635	regulatory region 399635	582 bp upstream
Rr629686	regulatory region 629686	718 bp distal
Rr629687	regulatory region 629687	within coordinates
Rr629688	regulatory region 629688	827 bp proximal
Rr629689	regulatory region 629689	880 bp proximal
Tssr56137	transcription start site region 56137	840 bp upstream
Tssr56138	transcription start site region 56138	994 bp upstream
Tssr60734	transcription start site region 60734	721 bp downstream
Tssr60735	transcription start site region 60735	738 bp downstream
Tssr60736	transcription start site region 60736	781 bp downstream