rs37699167 SNP Detail

Summary

• ID
  rs37699167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11485655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTCCTT AATCTGTTTT
  TCCCCCAAAC AAGGTTTGAC CTTGTGAAGA CCCCTCTTCC ACTTTCCGAG CTCGAAACAA
  CCCAATTTAA GTTAAAAACA CAGAACGACC TTTTCTCCTT TAAAGCAACA TTACCAAATG
  CAACATGCCA AGGGGTGTGC AGTTCCCAGC CCTGCATTCC GGAAGGCAAA TGCGGAATGC
  R
  GAGTCAGGTA GCTAGTTAGG TCCTCATCCA GCCACTCTTG ACTCTGTTCA AAATCAAAGA
  TGCTGTAAAA CAGCTTTCCT TTTTCTTAAC AATTCATCAT TGCGACGAAT AGAGAAAAGA
  AAAAGAAAAC AGCATTTTCC AAGTACTAAC AATATACTTG TGCGCCTAAC TCCTTGGGTT
  TTAAACCCTA GCATCCTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50960698	NES14422069	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37699167					SNP	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50960698	NES14422069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11485655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4418	CpG island 4418	835 bp proximal
Rr462902	regulatory region 462902	25 bp distal
Rr462903	regulatory region 462903	within coordinates
Rr462904	regulatory region 462904	949 bp proximal
Tssr3791	transcription start site region 3791	821 bp downstream
Tssr3792	transcription start site region 3792	864 bp downstream
Tssr3793	transcription start site region 3793	1057 bp downstream
Tssr115745	transcription start site region 115745	1 bp upstream
Tssr115746	transcription start site region 115746	844 bp downstream
Tssr115747	transcription start site region 115747	896 bp downstream
Tssr115748	transcription start site region 115748	953 bp downstream
Vsnl1	visinin-like 1	within coordinates