rs37699919 SNP Detail

Summary

• ID
  rs37699919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTACTTTA ACTTTGCCAG
  GATGTGGAAG CAAGAGCATC AAGCCAACAG GATGACTACA CAGTCCTGTT ACGTATCCTT
  CAGCAGCCCT AACCCTGGCC TTAAACAAAA TCCCTTGACA ACCCTTTTAA GTTCCTCTGT
  GTGTCTGTCT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTATGT
  R
  TAGTTGCCAG CTTAGAAATA TAAAATCCAT TATTTAAAAT TAGTTTTCGG GCAGCTAGTA
  GAGGACACGG GCAAGATGGC GGTGGTGGCT GGTCTGGTGC GGGGACCCTT GCGGCAGGTT
  TCCAGGCGTT TTCACCGCTC GGCGCCCGCA GCGGTGCAGT TGACAGTTCG TGAAGCTAAT
  AATCAAGGTA CGGATGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50908918	NES13484763	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37699919					SNP	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908918	NES13484763	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841278 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	76 bp upstream
Rr407423	regulatory region 407423	725 bp distal
Rr407424	regulatory region 407424	979 bp distal
Tssr5799	transcription start site region 5799	39 bp upstream