rs37700495 SNP Detail

Summary

• ID
  rs37700495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3374756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGACAGTG CTTGCTCCGG GGCAGTGCAG AGTAGTAGGT
  AGGTCTGGGC AGCGTCCGCA TTCAGAGTCC TGGGCTAGAC TGGTTTTGCT GCAGCACCCG
  R
  AGCTCTTTTG TCATGTAAAT TATTGCTTTT CTTAACTAAA GCCTCGCTAG ACTTAACCTT
  ACACTTGAAT TTTCTCTTTT ATCTATTTAT TTACTTTTAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50590238	NES13652910	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37700495					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50590238	NES13652910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3374756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10363	CpG island 10363	1940 bp distal
Cpgi10364	CpG island 10364	519 bp distal
Cpgi10365	CpG island 10365	175 bp proximal
Cpt1a	carnitine palmitoyltransferase 1a, liver	within coordinates
Gm58963	predicted gene, 58963	1008 bp upstream
Rr394044	regulatory region 394044	within coordinates
Rr542377	regulatory region 542377	1559 bp distal
Rr542379	regulatory region 542379	1975 bp distal
Rr542380	regulatory region 542380	1461 bp distal
Rr542381	regulatory region 542381	1242 bp distal
Tssr154176	transcription start site region 154176	1417 bp downstream
Tssr154177	transcription start site region 154177	1403 bp downstream
Tssr154178	transcription start site region 154178	930 bp upstream
Tssr157384	transcription start site region 157384	1035 bp upstream