rs37703816 SNP Detail

Summary

• ID
  rs37703816
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTGTCTGA TGAGATCTTC CTCAGAGACC TCCCCATCGT
  CTTCGATGTC CTCATTCATG ATCCCAGCCA CTTCCTCAAC GACTCTGCCA TTTCCTACAA
  K
  TGGAACTTTG GGGACAACAC TGGCCTGTTT GTCTCCAACA ATCACACTTT GAATCACACT
  TATGTGCTCA ATGGAACCTT CAACCTTAAC CTCACCGTGC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658464	NES14824252	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37703816					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658464	NES14824252	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024815 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	1431 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	1443 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56330	transcription start site region 56330	1876 bp downstream
Tssr56331	transcription start site region 56331	1831 bp downstream
Tssr56332	transcription start site region 56332	1758 bp downstream
Tssr56333	transcription start site region 56333	1720 bp downstream
Tssr56334	transcription start site region 56334	1710 bp downstream
Tssr56335	transcription start site region 56335	1690 bp downstream
Tssr56336	transcription start site region 56336	1663 bp downstream
Tssr56337	transcription start site region 56337	1640 bp downstream
Tssr56338	transcription start site region 56338	1624 bp downstream
Tssr56339	transcription start site region 56339	1610 bp downstream
Tssr56340	transcription start site region 56340	1420 bp downstream
Tssr56341	transcription start site region 56341	1160 bp downstream
Tssr56342	transcription start site region 56342	1128 bp downstream
Tssr56343	transcription start site region 56343	582 bp downstream
Tssr56344	transcription start site region 56344	558 bp downstream
Tssr56345	transcription start site region 56345	539 bp downstream
Tssr56346	transcription start site region 56346	486 bp downstream
Tssr56347	transcription start site region 56347	468 bp downstream
Tssr56348	transcription start site region 56348	445 bp downstream
Tssr56349	transcription start site region 56349	124 bp downstream
Tssr56350	transcription start site region 56350	95 bp downstream
Tssr56351	transcription start site region 56351	68 bp downstream
Tssr56352	transcription start site region 56352	49 bp downstream
Tssr56353	transcription start site region 56353	6 bp upstream
Tssr56354	transcription start site region 56354	21 bp upstream
Tssr56355	transcription start site region 56355	46 bp upstream
Tssr56356	transcription start site region 56356	64 bp upstream
Tssr56357	transcription start site region 56357	76 bp upstream
Tssr56358	transcription start site region 56358	94 bp upstream
Tssr56359	transcription start site region 56359	109 bp upstream
Tssr56360	transcription start site region 56360	146 bp upstream
Tssr60848	transcription start site region 60848	1473 bp upstream
Tssr60849	transcription start site region 60849	519 bp upstream
Tssr60850	transcription start site region 60850	466 bp upstream
Tssr60851	transcription start site region 60851	4 bp upstream
Tssr60852	transcription start site region 60852	16 bp downstream
Tssr60853	transcription start site region 60853	26 bp downstream
Tssr60854	transcription start site region 60854	45 bp downstream
Tssr60855	transcription start site region 60855	78 bp downstream
Tssr60856	transcription start site region 60856	116 bp downstream
Tssr60857	transcription start site region 60857	145 bp downstream