rs37708048 SNP Detail

Summary

• ID
  rs37708048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:129199750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATCtatat atctgtatct atatctatat
  ctatatctat atctatatct atatctatat ctatCACAAT AAAATATAAT GGACCCTTTT
  CTACTTGGGG TAACAGATCA TGTGGTCTTG AATTTTGGGA GATACTGTGA GATCTGGATG
  R
  CAGCTGATGC ATTTTTAAGA CAATGATCTA AAGAGAGGCA TAACCCTGAA TGTGAGCACA
  GAACTCCCTA GGACAATAGT GATTACTGGG TTCAAGGGCT AATGCTTCCC ACTCTCAGAA
  CCTGTCCCAC AGCAAGCTCC CCACCAAAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51361764	NES14480922	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	G	G		G
ss319968990	CHEV_1_131168590	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37708048					SNP	A	A	A	A	A	A	G	A	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51361764	NES14480922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:129199750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi699	CpG island 699	1104 bp proximal
Rr28456	regulatory region 28456	1050 bp proximal
Thsd7b	thrombospondin, type I, domain containing 7B	1289 bp upstream
Tssr8548	transcription start site region 8548	1423 bp upstream
Tssr8549	transcription start site region 8549	1458 bp upstream
Tssr8550	transcription start site region 8550	1478 bp upstream