rs37709066 SNP Detail

Summary

• ID
  rs37709066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8981450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAAATGGAGG TGAATCTCCC AAAGTCTGAC ATTGATGTCT CAGGACCCAA
  Y
  GTGGATGTCA AAGTTCCAGA TGTGAACATT GAAGGACCTG AAGGAAAGCT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50608846	NES13643499	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37709066					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50608846	NES13643499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8981450 () rs orientation: forward

Symbol	Name	Function Class
Ahnak	AHNAK nucleoprotein	within coordinates
Tssr154925	transcription start site region 154925	1669 bp downstream
Tssr154926	transcription start site region 154926	1577 bp downstream
Tssr154927	transcription start site region 154927	1429 bp downstream
Tssr154928	transcription start site region 154928	1354 bp downstream
Tssr154929	transcription start site region 154929	1295 bp downstream
Tssr154930	transcription start site region 154930	1249 bp downstream
Tssr154931	transcription start site region 154931	985 bp downstream
Tssr154932	transcription start site region 154932	950 bp downstream
Tssr154933	transcription start site region 154933	320 bp downstream
Tssr154934	transcription start site region 154934	257 bp downstream
Tssr154935	transcription start site region 154935	202 bp downstream
Tssr154936	transcription start site region 154936	34 bp downstream
Tssr154937	transcription start site region 154937	49 bp upstream
Tssr154938	transcription start site region 154938	333 bp upstream
Tssr154939	transcription start site region 154939	1618 bp upstream
Tssr154940	transcription start site region 154940	1816 bp upstream
Tssr154941	transcription start site region 154941	1850 bp upstream
Tssr158086	transcription start site region 158086	1119 bp upstream
Tssr158087	transcription start site region 158087	547 bp upstream