rs37718823 SNP Detail

Summary

• ID
  rs37718823
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130289696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCATGT CAATACTTAA
  GTGACAAAAA TACTTCCTGA AAGTCAAGAG GGGACATGAT CCAAATATAA TCAGTTTGAG
  TCTCTAGCAT AAGGGCCTCC TGTAGTAGTA TAAGCAGTTG CTTTTTAAAT TACCTTCTGT
  TTGTGTTCTA TAAACTTGGC AAGTTCAAGA GTTGCTGCGA CTCCTCAGCT TTTTCCAGGT
  S
  GAACTAAATT ATCTATGTCT TTAAAACAAA ATTTGGAGCC ATGTGGCCCC CTGAAAGTTA
  TGGCTTTCAA TTTATATGAG ATTCTATAAA TTGTGTTAGA GTTAAGTGAA TATTTGGAAA
  GAATATTAAA GTTTGTCTCT ACTTTCTAGG AAAGTATGAG GATCTGCCTA GGTTACTAAA
  TACCAGAACA CAGTGGATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51628811	NES14661394	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37718823					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51628811	NES14661394	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130289696 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585170	regulatory region 585170	861 bp distal
Rr585171	regulatory region 585171	1114 bp distal
Rr585172	regulatory region 585172	910 bp distal