rs37718893 SNP Detail

Summary

• ID
  rs37718893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123798990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAAAAAT CAATAAAAAA
  TGTTAAAGGT GACTACCTAC GCCCAGCACA GTAGTGTAAG CCTTTAGTCC CAGCACTGAA
  TAGGCAGTGG CAGGCAGTTC CCTGAGTTTG AGGCCAACCT GGTGTACATA ATGAGTTCCT
  GGGCAGCCAG GTATACACAG AGAAACCCTG TCTCAAAAAA CAAATAAACA AACAAAAAAG
  Y
  GAGTGCCTGA GGAAAAATTA AGTACTTCAC AAATAATGAT TCAACCAAAT TTTTTGAAAC
  CAAATCTTAA GTACCTGAGG CTTGCCTAAA ACTTGATGTG TAGCCGAAGA TGACCTTGAA
  CTTGTGTCCT GTGGCCTCTA ACCCCCCAGT GCTGGAATTA CTAGCCTGCA CAACCATGCA
  GTTTTTGTGG TGCTGAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51811284	NES14718012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37718893					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51811284	NES14718012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123798990 () rs orientation: forward

Symbol	Name	Function Class
Clip1	CAP-GLY domain containing linker protein 1	within coordinates
Rr620238	regulatory region 620238	482 bp proximal
Tssr48802	transcription start site region 48802	1298 bp upstream
Tssr53252	transcription start site region 53252	724 bp downstream
Tssr53253	transcription start site region 53253	737 bp downstream