rs37722372 SNP Detail

Summary

• ID
  rs37722372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131457100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAATATTT TGTGAATTTG CTTAGGTAGT CATCATTTAT
  TACCAAGGTA AATGAGGTGT TATTTTGTTT GTGTAGGTGC ACTTGTATAA CGAAATAGCA
  R
  TAGATAATAA AACCGTAAAA CCAAATGTCC CAAAGGTTCT ATGATCCCAA TGTTGTTTTA
  GTTAGATATG CTCACGTAAA AATCTGAAAT ATTCTATCTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368024	NES14475983	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37722372					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368024	NES14475983	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131457100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	721 bp distal
Fam72a	family with sequence similarity 72, member A	within coordinates
Gm70877	predicted gene, 70877	1674 bp downstream
Rr396286	regulatory region 396286	1779 bp downstream
Rr396287	regulatory region 396287	1469 bp downstream
Rr418132	regulatory region 418132	1449 bp distal
Rr418133	regulatory region 418133	1207 bp distal
Tssr8629	transcription start site region 8629	1491 bp downstream
Tssr8630	transcription start site region 8630	1451 bp downstream
Tssr8631	transcription start site region 8631	1360 bp downstream
Tssr8632	transcription start site region 8632	986 bp downstream
Tssr13602	transcription start site region 13602	1977 bp upstream
Tssr13603	transcription start site region 13603	1822 bp upstream