rs37723497 SNP Detail

Summary

• ID
  rs37723497
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7461940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTGTTGAG TGCCAGAGAA CGATGGCAAA GGGAACTGTA
  TGCCAGTAAT CAGGAATCCA ATTACTTATT TTGGTGAATG CTTAAGTATT TTTTTCTTAA
  R
  GTCTATGTTA AAGTCAGGCA TGCTGGATAG TTCTATGTTA CCTTGAAATC TGAAAAGAGG
  GAACCTTGAT TAAGAAAATG ACTCCAGCCA GGCAGTGGTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50591948	NES13643759	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37723497					SNP	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50591948	NES13643759	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7461940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	1082 bp distal
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	1384 bp distal
Rr543686	regulatory region 543686	804 bp distal
Rtn3	reticulon 3	1294 bp upstream
Tssr5428	transcription start site region 5428	1591 bp upstream
Tssr5429	transcription start site region 5429	1507 bp upstream
Tssr5430	transcription start site region 5430	1411 bp upstream
Tssr5431	transcription start site region 5431	1285 bp upstream
Tssr157987	transcription start site region 157987	1452 bp upstream
Tssr157988	transcription start site region 157988	1427 bp upstream
Tssr157989	transcription start site region 157989	1365 bp upstream
Tssr157990	transcription start site region 157990	1346 bp upstream
Tssr157991	transcription start site region 157991	1296 bp upstream