rs37727466 SNP Detail

Summary

• ID
  rs37727466
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40366580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG GAAGACTGCT GGAGAGAAAC
  K
  GGAACCTACC TGCTTTCACT GCATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677589	NES14010795	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		T	G	G	G		G
ss136330427	ENSMUSSNP1771629	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						G
ss322916242	CHEV_9_40262869	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37727466					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677589	NES14010795	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40366580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	120 bp proximal
Rr676840	regulatory region 676840	376 bp proximal
Rr676841	regulatory region 676841	551 bp proximal
Tssr84449	transcription start site region 84449	9 bp upstream
Tssr84450	transcription start site region 84450	607 bp upstream
Tssr88934	transcription start site region 88934	58 bp downstream
Tssr88935	transcription start site region 88935	134 bp downstream
Tssr88936	transcription start site region 88936	159 bp downstream
Tssr88937	transcription start site region 88937	222 bp downstream
Tssr88938	transcription start site region 88938	490 bp downstream
Tssr88939	transcription start site region 88939	497 bp downstream
Tssr88940	transcription start site region 88940	553 bp downstream
Tssr88941	transcription start site region 88941	835 bp downstream
Tssr88942	transcription start site region 88942	853 bp downstream
Tssr88943	transcription start site region 88943	868 bp downstream
Tssr88944	transcription start site region 88944	911 bp downstream
Tssr88945	transcription start site region 88945	946 bp downstream
Tssr88946	transcription start site region 88946	1028 bp downstream
Tssr88947	transcription start site region 88947	1056 bp downstream
Tssr88948	transcription start site region 88948	1103 bp downstream