rs37728479 SNP Detail

Summary

• ID
  rs37728479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25190639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGATGT GAGGGTAGGG
  CTAGCCTGGG GTACATGAAG AGGCTGTCTG GAACATACAA CCCGCCTTGG GTAAACTGTG
  CTTTACTATT GAATGCTTTA GTTCAGAACA AAGGACAGCT GAGGCCTCTA CATGGGGAAG
  AGCCAGGCCA CAGCAGTTCT GAGGACACTC TAGTGTGTCC CCTCCATCCT GTTCTTTCTA
  Y
  TCTTGAGTGG GTGCGCGCAT ACAGAGACCC AGCCGCTGCA TCAGCGCATA ACTGGATGGG
  AAGGGTCCTG CCTGCTCTCA TTTTCCTTCA TTTTTCTATA TTAGGGGCAA GATGATCTAT
  TTTTAGTGTG TAGCTGGTGT AAGTCAGGGG TTGCTATAGC AACGGCAAGT GGCTACAAAC
  CCAGTGCCGC TCCGGTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51082714	NES13879786	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37728479					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51082714	NES13879786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25190639 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1500035N22Rik	RIKEN cDNA 1500035N22 gene			201 bp upstream
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608457	regulatory region 608457			1632 bp distal
Rr608459	regulatory region 608459			1887 bp distal
Rr608460	regulatory region 608460			within coordinates
Rr608461	regulatory region 608461			229 bp proximal
Tssr45452	transcription start site region 45452			199 bp upstream