rs37728550 SNP Detail

Summary

• ID
  rs37728550
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24215756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATCCCTC AACACATGCA
  AAAAACAAGT ATACAAATAC AAACACCAAA AAGAAAACAA AATAAAATTT TAATGAGTCA
  AAAACGTGAA AATAATTCAA GGAAGCAAAC CTCAAAACTA TCAGGCACCA CGATTTACAG
  AGATGATTGG CCCCCCTGAT TCTGCGTTCC TCCGACATTT GTATCCTCCA AGATGGAACC
  S
  GAAGTCAGGC ATCCTTTGCT TGCCGTACAG GGCCAGGAGT CCTGTTGCTC CTGAGGAGTG
  CTCAGGTTCA GGAGGAGGTC TGTGCACAAG AAACAGTGGC GTGTGCACAC CTCCTGTCTA
  GGCCTGTGAT GCTAGTAATT CACTCTCTGG TTTCTTATGG GCAAGATTGT GTTGTGTTCT
  CCCCGGTCTA TTCAATCGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50928131	NES13475663	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37728550					SNP	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50928131	NES13475663	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24215756 () rs orientation: forward

Symbol	Name	Function Class
Col9a1	collagen, type IX, alpha 1	935 bp upstream
Rr408587	regulatory region 408587	1355 bp distal
Tssr21	transcription start site region 21	978 bp upstream
Tssr6103	transcription start site region 6103	1014 bp upstream