GAAGC TTGCTCCTGC CAACTGCTTC R TTGTAGGAGC CCCGCGTGAG TCATG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50415659 | NES13934685 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | A | A | G | A | A | ||
ss322267512 | CHEV_7_82731353 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
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rs37732591 | SNP | G | G | G | G | G | G | A | G | A | A | G | G | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50415659 | NES13934685 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr7:75236215 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Akap13 | A kinase anchor protein 13 | within coordinates | ||||||
Rr400375 | regulatory region 400375 | 1510 bp upstream | ||||||
Rr649259 | regulatory region 649259 | 752 bp distal | ||||||
Rr649260 | regulatory region 649260 | 658 bp proximal | ||||||
Tssr67241 | transcription start site region 67241 | 753 bp downstream | ||||||
Tssr67242 | transcription start site region 67242 | 279 bp downstream | ||||||
Tssr67243 | transcription start site region 67243 | 247 bp downstream | ||||||
Tssr67244 | transcription start site region 67244 | 232 bp downstream | ||||||
Tssr67245 | transcription start site region 67245 | 195 bp downstream | ||||||
Tssr67246 | transcription start site region 67246 | 163 bp downstream | ||||||
Tssr67247 | transcription start site region 67247 | 134 bp downstream | ||||||
Tssr67248 | transcription start site region 67248 | 91 bp downstream | ||||||
Tssr67249 | transcription start site region 67249 | 55 bp downstream | ||||||
Tssr67250 | transcription start site region 67250 | 19 bp downstream | ||||||
Tssr73048 | transcription start site region 73048 | 1421 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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