rs37739562 SNP Detail

Summary

• ID
  rs37739562
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70871662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCAGC AAGTTCCAGG
  CTAAGGGGAG AGCCTGTCTC AATAAAACCA AAGAGGGCAG CATCTGAGGA ATGACTGTGG
  AGGTTGGCCT CTGGTCTTCC CCACAACACA CACACACACA CACACACACA CACACACACA
  CACACACACA TCCCTGTTCC ATCATGGTGG AGATGCAGTT GAGGGAAGAG CACTTATCAG
  W
  AAGGATGCTT TTGATTGAAC AAAGAAGTCA ATATGCTTTA GTTTGAGTTG AAGTATTTAA
  GCTATGTCAC AGGACCCAAG ATCAGGAGCC AGCAGTCCTG TAGGCAGAGG CGACTCAGGG
  AGCAGGCTGG CATCAAGACT CACTCTATTC TTCCTGACTC CCCATTTGAG CTTTCTTTGT
  TTTAATGGTC CACGTGGATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50736526	NES14247201	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37739562					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50736526	NES14247201	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70871662 () rs orientation: forward

Symbol	Name	Function Class
Rr682460	regulatory region 682460	1349 bp distal
Rr682461	regulatory region 682461	534 bp distal
Rr682462	regulatory region 682462	682 bp proximal
Rr682463	regulatory region 682463	1812 bp proximal