rs37740502 SNP Detail

Summary

• ID
  rs37740502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:95970739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAAACC AAGAGCCCAA
  ACAAACTTTC CCTCCTTTTG CACTGATCTG CTCAGGGGAA GGGTATCACC TTGTTCGACA
  CCAGCTACAG CACACACTAG GACCCAGTCT ATGGCCACCC TGTGCAAGTC TGTGGTGATC
  ACAAGGGTCT GCTATTAGAA TCTGAGCCAG ACTGCTGCTC AGACCACGCC CACCTGCAGC
  R
  GCCTCCTTTC TTTTGGAAAG GAAACAGCAA ACCCTTTACC CAGGGCCTGC TTGTGAATCT
  TTAGGCTCCT AACTGACTCC CCGATGCCTG GATTCCAGGA GAATCCTCAT GTCCCTCCTC
  ATTTCCCCAA AAGGCTCAGG TAAAGAGCTC CTGCCATGCT GCTGTCTGTC TGTCCATCCA
  TAGTATTAAT AATTCTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51973418	NES14990781	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37740502					SNP	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973418	NES14990781	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95970739 () rs orientation: forward

Symbol	Name	Function Class
Cngb1	cyclic nucleotide gated channel beta 1	Intron
Cpgi20868	CpG island 20868	1608 bp distal
Rr368590	regulatory region 368590	1216 bp upstream
Rr668196	regulatory region 668196	within coordinates
Rr668197	regulatory region 668197	739 bp proximal