rs37741249 SNP Detail

Summary

• ID
  rs37741249
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57173270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCA CTACAGGACT CCAAACCCTC
  S
  TGAGAATGAG AGAAGGCTCA GATGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52020752	NES15041782	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	G	C	C	C	C	C	C		C	C	C		C
ss136517993	ENSMUSSNP1446777	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss322971879	CHEV_9_57113794	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37741249					SNP	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52020752	NES15041782	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57173270 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	within coordinates
Gm68491	predicted gene, 68491	324 bp downstream
Rr679625	regulatory region 679625	532 bp distal
Rr679626	regulatory region 679626	1298 bp proximal
Tssr89773	transcription start site region 89773	197 bp upstream
Tssr89774	transcription start site region 89774	169 bp upstream