rs37741439 SNP Detail

Summary

• ID
  rs37741439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90884275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCTTACA TCATAACATC
  AACCTTCTGA AGCACCCAGT GGCCTGTTCT TTAAAATGAT CCTTGCTGAT TATCCCACCT
  AGTGGTGAGC CTGACACTGC TCTTGCACTT CCTGTCACAG AAAAGGACCT GGGCCTTAGC
  TGGACATTAT ACTCTGCTGT CCAAAAGTCC TGGGTCCTCT GATGGAGTCC TGGGTCCCAC
  Y
  TTGACATGTT GACCTTGACC TTGAGTTCAG GGCCCTGCCT CTCAACTGTA AGAGATCTCT
  CCATCCCTGG GCACCACTGA CTTTCACAAG CCTGGTGAAG CTGGGTGGTT CCAGATCCAT
  CCAGTCTTGG GCTTTCTGCT GAGGTGTGTC AAAGGGAGCA TTACTAATCA GTCAAGAGAA
  AGGAGAGATT GGTAACCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss51301154	NES14511532	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs37741439					SNP	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51301154	NES14511532	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90884275 () rs orientation: forward

Symbol	Name	Function Class
Rab17	RAB17, member RAS oncogene family	1580 bp downstream
Rr415504	regulatory region 415504	within coordinates
Rr415505	regulatory region 415505	329 bp proximal
Rr415506	regulatory region 415506	476 bp proximal