rs37743904 SNP Detail

Summary

• ID
  rs37743904
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58665105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTTCCACCGT GAATTATACA GAATTCTCTC TCTTTTTTTT
  TTAAATCAAA GGACTCCTAC TATGTCCCTG AAACATAAGT TCCGTTGTGA CAAGTGAGTG
  S
  GAGGAAACTT TGGGGTGGAG CATGCATTTA TAACCCAATT TTTTCGTTTC TTTTAAGAAG
  ATTTGGTTTT ATAGGTATAT TGTCTATATT TAAGTATATC A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ
ss50904001	NES13492690	PERLEGEN	MM_PANEL2	f	SNP			G		C
ss146566709	ENSMUSSNP5474034	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ
rs37743904					SNP	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904001	NES13492690	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58665105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	388 bp distal
Pnlip	pancreatic lipase	within coordinates
Tssr157271	transcription start site region 157271	1608 bp downstream
Tssr157272	transcription start site region 157272	1592 bp downstream
Tssr157273	transcription start site region 157273	445 bp downstream
Tssr157274	transcription start site region 157274	442 bp downstream
Tssr157275	transcription start site region 157275	410 bp downstream
Tssr157276	transcription start site region 157276	384 bp downstream
Tssr157277	transcription start site region 157277	151 bp downstream
Tssr157278	transcription start site region 157278	463 bp upstream
Tssr157279	transcription start site region 157279	480 bp upstream
Tssr157280	transcription start site region 157280	496 bp upstream
Tssr159961	transcription start site region 159961	1503 bp upstream