rs37746669 SNP Detail

Summary

• ID
  rs37746669
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7196100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTTCTG TTCCTTTCTC
  CTCTCTCCTT CCTTCTTGTT TTACTAGACA AATACCTGAT CAAGTGGTTC CCCATTGCTT
  TCTTTAAAAA AATATTTATG TATGTGATTA CACTGTGTCT ATACAGATGG TTGTGAGTCT
  TCATGTCACT GTTGGGATCT GAATTTTTAA GACCTCTGCT TGCTCCGGTC AGCTCTGCTC
  R
  CTCCTGTAAA CTCAGTCCCT GCTTGCTCTG GCACAAAGAT TTATTTATTA TTAATACATA
  AGTACACTGT AGCTGACTTC AGATGCACCA GAAGAGGGCC TCCAATGGGA TTTGAACTCA
  GGACCTTCGG AAGAGCAGTA AGTGCTCTTA TCCACTGAGC CATCTTGCCA GCCCTCCCCA
  TTGCTTTCTA GACAAGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50592950	NES13646657	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37746669					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50592950	NES13646657	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7196100 () rs orientation: forward

Symbol	Name	Function Class
Cox8a	cytochrome c oxidase subunit 8A	1119 bp upstream
Cpgi10550	CpG island 10550	832 bp distal
Gm59070	predicted gene, 59070	within coordinates
Rr405837	regulatory region 405837	970 bp downstream
Rr543611	regulatory region 543611	1051 bp distal
Rr543612	regulatory region 543612	389 bp distal
Rr543613	regulatory region 543613	743 bp distal
Rr543614	regulatory region 543614	464 bp proximal
Rr543615	regulatory region 543615	597 bp proximal
Rr543616	regulatory region 543616	800 bp proximal
Tssr154738	transcription start site region 154738	867 bp downstream
Tssr157943	transcription start site region 157943	1207 bp upstream
Tssr157944	transcription start site region 157944	1192 bp upstream
Tssr157945	transcription start site region 157945	1155 bp upstream