rs37746744 SNP Detail

Summary

• ID
  rs37746744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40289053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGTACT TCCTCAATAT
  GACTTTAAAC TAACGCCGGA ATCATTGATG TGTCCCTCTG GCATTTGACT AACACGGAAG
  AAACACTCTC TAGGACCCTG ATCTAGGGTC CCTTTCAGGG ATATGATAGC CAAAGACCCA
  TGACTGGTAG AATTCCTTTC CACCCACAGC CCCATGCCAG GTGATGTCCA AATGCCACCA
  R
  AACTTCTGAA AACATCGCTT ATTGTGTTTT TAAGGATCCT TGGGCCTGTA TCCAGGCCAT
  ACACTCAGCA CAGGAATGGA TGAGGTATAC CAGATTCCCA AGGTACACTG AATTTCCTTC
  ATGGCTTGGT AAGGTGATCC GAATTCCCAC GATCCAGCCT CCAGGCTAAT GTCCTCTATA
  TAGATGTAAA TCTTCTCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677880	NES13999655	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37746744					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677880	NES13999655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40289053 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	1347 bp distal
Rr676806	regulatory region 676806	1479 bp distal
Rr676807	regulatory region 676807	1428 bp distal
Rr676808	regulatory region 676808	921 bp distal
Tssr88904	transcription start site region 88904	1618 bp upstream
Tssr88905	transcription start site region 88905	1494 bp upstream
Tssr88906	transcription start site region 88906	1399 bp upstream
Tssr88907	transcription start site region 88907	1342 bp upstream
Tssr88908	transcription start site region 88908	1313 bp upstream
Tssr88909	transcription start site region 88909	910 bp upstream