rs37749027 SNP Detail

Summary

• ID
  rs37749027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30512242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACATTG AAAAAGAGAG
  AGAGACTGGT GAAAACCAAG ACCTTGAACA CTTAAAGAGA TGGCAGTAAA GGATAAGGAC
  ATTTCAACCT CGGTCGCAGA AGGAAGTATA TTGAGAAATA CCATCAACTC TCTTAGAGGT
  CCTCTAGATA GATCTGCCCA TCTAAGGCAT CTAAGAACAT GTATCAGTAC CTGCAACAGT
  R
  GCTTAAGTCT ATGTCATAAT TGGTTGCCAG GGAAGTTGTC CTAGGTCACG GAGGGAAATC
  GTTCCCGGTC ACCTTCATCC CTTTGAGCAT GTTTATTTTC TAAGCAAGAA GCTATCATGG
  GACACCTTTT GTCTTTATTT TGGGAGGTGG ATCCCCCTCC CATACCTCTC GGTTTCACCA
  TGCCCAGTCA GGATGCCGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51572142	NES14860667	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37749027					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51572142	NES14860667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30512242 () rs orientation: forward

Symbol	Name	Function Class
Rr134712	regulatory region 134712	1642 bp distal
Rr146079	regulatory region 146079	1641 bp distal
Rr148899	regulatory region 148899	1360 bp proximal
Rr379134	regulatory region 379134	1542 bp downstream
Ssmem1	serine-rich single-pass membrane protein 1	within coordinates
Tssr55343	transcription start site region 55343	40 bp upstream
Tssr55344	transcription start site region 55344	51 bp upstream
Tssr55345	transcription start site region 55345	79 bp upstream
Tssr55346	transcription start site region 55346	97 bp upstream