rs37752521 SNP Detail

Summary

• ID
  rs37752521
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GGTTGAGAAT CAGTGGATTA
  M
  AGAATTAAAG CAAAACTGTC AAATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51195106	NES13813325	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	A	C	C	C	C	C	C		C	C	C		A
ss149192238	ENSMUSSNP1693027	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						C
ss321670143	CHEV_5_123441156	CHEVERUD	SCREENING_POP	f	SNP												A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs37752521					SNP	A	A	A	C	A	C	C	C	C	C	C	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195106	NES13813325	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129210 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16566	CpG island 16566	1614 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	1877 bp upstream
Rr620032	regulatory region 620032	1999 bp distal
Rr620033	regulatory region 620033	1852 bp distal
Rr620034	regulatory region 620034	1351 bp distal
Rr620035	regulatory region 620035	1206 bp distal
Rr620036	regulatory region 620036	331 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48730	transcription start site region 48730	1895 bp downstream
Tssr48731	transcription start site region 48731	1866 bp downstream
Tssr48732	transcription start site region 48732	1832 bp downstream
Tssr48733	transcription start site region 48733	1781 bp downstream
Tssr48734	transcription start site region 48734	1535 bp downstream
Tssr48735	transcription start site region 48735	1408 bp downstream
Tssr48736	transcription start site region 48736	1385 bp downstream
Tssr48737	transcription start site region 48737	1204 bp downstream
Tssr48738	transcription start site region 48738	378 bp downstream
Tssr48739	transcription start site region 48739	367 bp downstream
Tssr48740	transcription start site region 48740	322 bp downstream
Tssr48741	transcription start site region 48741	283 bp downstream
Tssr53173	transcription start site region 53173	1867 bp upstream
Tssr53174	transcription start site region 53174	1809 bp upstream
Tssr53175	transcription start site region 53175	857 bp upstream
Tssr53176	transcription start site region 53176	740 bp upstream
Tssr53177	transcription start site region 53177	684 bp upstream
Tssr53178	transcription start site region 53178	652 bp upstream
Tssr53179	transcription start site region 53179	618 bp upstream
Tssr53180	transcription start site region 53180	574 bp upstream