rs37754062 SNP Detail

Summary

• ID
  rs37754062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38219956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAT TTGGTAAACT GTAAAAAACC
  R
  AGTAGGCTAA GGAAGCTAGG CAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51098403	NES14356935	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37754062					SNP	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51098403	NES14356935	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38219956 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	624 bp proximal
Riok1	RIO kinase 1	1015 bp upstream
Rr281252	regulatory region 281252	44 bp proximal
Rr369679	regulatory region 369679	1366 bp upstream
Tssr119342	transcription start site region 119342	1255 bp upstream
Tssr122123	transcription start site region 122123	910 bp downstream
Tssr122124	transcription start site region 122124	945 bp downstream
Tssr122125	transcription start site region 122125	1103 bp downstream
Tssr122126	transcription start site region 122126	1185 bp downstream
Tssr122127	transcription start site region 122127	1939 bp downstream
Tssr122128	transcription start site region 122128	1961 bp downstream
Tssr122129	transcription start site region 122129	1991 bp downstream