rs37755703 SNP Detail

Summary

• ID
  rs37755703
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5712843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGGGGC AGGGGCAGGC
  CTCCATTAGT ACTTTTTTTT GCATCATCCA GTGGCATCAA GGGGGCCAGG CTGGGAGGGG
  ACAGGGAGCA GCTCCACGGT GCCCCTCAGC TGGGTCTCCA GAACCAAACA AGAGCAGACC
  TCCTCAGGGT CTTCCTGTCT GTCTGTCTGT CTTCTAGGAT AAGCTCTGAT GCTGCACTTC
  W
  TGAGTTCTTT GAAGACTCCT TGGAAACTGA AAGGTGAAGC CAACTATGTC CGTGTGTGAA
  CTGTGCAGGC CCCAGGTCCA TAGACCAAGC TGTGGGCACA GACTGAGGCC GCAGTGCCGG
  GAGGAGCCCT GGGAATGTGT GCAGCCCAGT CCAGGAGCTC CCTCTTGTTC TGGCCCTGCC
  TTAAGGGGTG TACTTGGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50578090	NES13650467	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37755703					SNP	A	A	A	T	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578090	NES13650467	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5712843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10466	CpG island 10466	1882 bp distal
Cpgi10467	CpG island 10467	588 bp proximal
Pcnx3	pecanex homolog 3	1820 bp downstream
Sipa1	signal-induced proliferation associated gene 1	within coordinates
Tssr157622	transcription start site region 157622	1153 bp upstream
Tssr157623	transcription start site region 157623	820 bp downstream
Tssr157624	transcription start site region 157624	859 bp downstream
Tssr157625	transcription start site region 157625	886 bp downstream