rs37768855 SNP Detail

Summary

• ID
  rs37768855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18708143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCAAATT TCAACCCCAG
  GTTTTATGGC TACTGGACAT TTAGCCAGCA TGGCATGGTC CACTTTGCCC TGCTGGAGTG
  GAACACTGCA GGAGAGAGAG AGAGAGACAG AGAGAAGCCC GTAGTCATAC GTCTTCATGG
  GCTCCTGGTT TAAAGATACT GCATAAACAA CTGTCCAATA AATCTCTGCC ATTTCTCATA
  Y
  GGGGTGAGTA TATTTCCCTT CTTCTTTAGA AGCGTCTATG AAGGACTGTG TAATGGTCAT
  TATTTATAGC AAACCACATA GACAGAAATC TTAGAATATC TTTAGGGACT TGCTGGTGTC
  TGTGAAATAG GTATTCCTAT TGTTTATCCT CTGCTTTTTG TCTATGACCC GAGGCTCCAG
  AAGAAAAAGA ACTGACCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50685051	NES13607301	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37768855					SNP	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685051	NES13607301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18708143 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	1962 bp upstream
Gm50202	predicted gene, 50202	1094 bp downstream
Gm59201	predicted gene, 59201	within coordinates
Tssr155454	transcription start site region 155454	162 bp downstream
Tssr155455	transcription start site region 155455	130 bp downstream
Tssr155456	transcription start site region 155456	90 bp downstream
Tssr155457	transcription start site region 155457	650 bp upstream
Tssr155458	transcription start site region 155458	1961 bp upstream