rs37772812 SNP Detail

Summary

• ID
  rs37772812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35516152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCGT TCCCGATTCG AACTGCTCGG
  R
  TTTCCTTCTC AGGAACCCGG TGCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51601170	NES14847548	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	A		G	G	G	G		G
ss321783479	CHEV_6_35489217	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37772812					SNP	G	G	G	A	G	A	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51601170	NES14847548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35516152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17298	CpG island 17298	within coordinates
Gm68014	predicted gene, 68014	618 bp upstream
Mtpn	myotrophin	within coordinates
Rr146138	regulatory region 146138	within coordinates
Rr399612	regulatory region 399612	540 bp upstream
Tssr60312	transcription start site region 60312	934 bp upstream
Tssr60313	transcription start site region 60313	490 bp downstream
Tssr60314	transcription start site region 60314	530 bp downstream
Tssr60315	transcription start site region 60315	548 bp downstream