rs37773482 SNP Detail

Summary

• ID
  rs37773482
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52519971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTTGAG GACAGCTACT
  GCCAACAGCA GATAAAAAGT TCAGGGCTGA ACTGGCTTCT AGGGGACGCC ACCTGAAGGA
  GGTTCACTGA GCTCCAGGAG GCACGCAGAG AACAGGTTAC CGAACAAACT TCCCACCTGC
  CAGGCCTGGC GACTGGAGGT GTCAGGGGCC ATTCTGTCTC TAGCTGTACC ACTGATGCTC
  V
  GTTATCTTCC TAAGTGTGTG AACCACATGG GGCAGAAACT TGTGCAGCTT GGAGACTCTG
  GTGTGTGGTG TGGTAGGGGG CAGGTACCCA ATAACCATTT GTCAAAGGAA TTCAGGGGAC
  AGACAAGCGG CAGCAAGCTG GGGATGCTTC TCTGGGAAAG AGAGCCTTTT ATTTCTAGAG
  AGTTTCTGTG ATGGACAGGA                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118314	NES13854577	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G		G	G	A
ss148440001	ENSMUSSNP7071299	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37773482					SNP	G	G	G	G	G	G	G	A	G	G	G	C	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118314	NES13854577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52519971 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	1426 bp distal
Rr611420	regulatory region 611420	757 bp proximal
Rr611421	regulatory region 611421	1173 bp proximal
Sod3	superoxide dismutase 3, extracellular	1175 bp upstream
Tssr46168	transcription start site region 46168	1283 bp upstream
Tssr46169	transcription start site region 46169	1296 bp upstream
Tssr46170	transcription start site region 46170	1327 bp upstream