rs37778101 SNP Detail

Summary

• ID
  rs37778101
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:92033213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG AATGAGAAAT GACTTTTCAC
  M
  GATATTGATA GTGCTTTCAA GCGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50605889	NES14042930	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	A		A		C	C		C
ss145568323	ENSMUSSNP5290231	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				C
ss322790932	CHEV_8_93830484	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37778101					SNP	C	A	C	A	A	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605889	NES14042930	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92033213 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm45428	predicted gene 45428			within coordinates
Rpgrip1l	Rpgrip1-like			Intron
				Noncoding-Transcript-Variant
Rr382458	regulatory region 382458			1238 bp downstream
Rr406224	regulatory region 406224			300 bp distal
Rr407238	regulatory region 407238			1210 bp distal
Rr667510	regulatory region 667510			1623 bp distal