rs37783646 SNP Detail

Summary

• ID
  rs37783646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135280342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTAGATG CAACCATTCA
  GCAGAGGTAC AGACTGATCA GGGTCCTTAT ACCCTGGGCC TTCAATGTCT GTCCTATGGA
  CCTAAGCTTA TGGGAGAGCT AGTGGCTGGG CAGAGCCCTG AGTGTCTCTC AGGATGGAGA
  GGAGTTTCGT TCTCCCCTGG CCCCTCTGCA GGATGTCCTC CTATCTTACC CCTGGCTTGG
  Y
  TTGCCCTGGC CACATCTACC ATACAAGCAG GTCACCTCTA CCGGGCCTAA CCAGCACCAG
  AGTAAGGCTT GGGGGTTGTA GCTCTGAGCC AGGACTGTGT TCCCAGCATT TGGAAGGAGG
  ATTTTGAATT TGAGGTTAGC TGGGGCTACA TTTCAAGACC CTGGGCCAGC CTGAGAGAGA
  GCTAATGAAC ATGTTTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51380342	NES14468651	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37783646					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380342	NES14468651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135280342 () rs orientation: forward

Symbol	Name	Function Class
Gm56137	predicted gene, 56137	1113 bp downstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr35730	regulatory region 35730	332 bp distal