rs37787150 SNP Detail

Summary

• ID
  rs37787150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72575784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGTCTTC CGAGCCCTGG
  CAGCAACATG TGGATCACTG CTCTGCTGCT GGCCGTGCTG CTGCTGGTGA TCCTCCACAG
  GGTCTACGTG GGCCTTTACG CTGCAAGTTC CCCGAACCCC TTCGCCGAGG ATGTCAAGCG
  ACCGCCTGAA CCCCTGGTGA CCGACAAGGA GGCTAGGAAG AAAGTTCTCA AACAAGGTCA
  R
  CTGATGGGTT TCAGGCCTGC TCTCGGGCCT TCTGCTCATG TCTCCCCATT AGTAAAGTGC
  TGGGAAAACT TCTCTTGCAC ACAGAGGTTC CATAATTTAG TGTTCTTTGC TTCTGAAAGG
  GTGCAGGCAT TACCCTTGGC ACGCCAAATT CCAGCCCCGC CAGTTGGAAT CTTTTCAGCT
  CACGGCTTAC ACAGAATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51695535	NES14820321	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37787150					SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695535	NES14820321	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72575784 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17548	CpG island 17548			within coordinates
Elmod3	ELMO/CED-12 domain containing 3			388 bp upstream
Retsat	retinol saturase (all trans retinol 13,14 reductase)			Intron
				Splice-Site
Rr399707	regulatory region 399707			171 bp downstream
Rr632239	regulatory region 632239			470 bp distal
Rr632240	regulatory region 632240			163 bp distal
Tssr57150	transcription start site region 57150			192 bp downstream
Tssr61470	transcription start site region 61470			433 bp upstream
Tssr61471	transcription start site region 61471			377 bp upstream