rs37787339 SNP Detail

Summary

• ID
  rs37787339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:125143143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGGATG TGCAAGATCC
  TGCTTCAAAA GCAAACAAGA ATATGCCTTT TGCTATTAAT TTATTTACTG ATAGTTTGTT
  CAAGAAAACT CCCGGAGGGG GCAAAGGAAG ATTTTCCTTT AACCATACAA TGCGTATGTG
  CTTATACACA CACACACACA CACACACACA CACACACACA CACACACAAA TTATCCAAAA
  Y
  AACACATAAA GAGATATTAA CTGCGTATAG TTAGGGAAAG TCACTCTATA TAACTTGTGA
  GGCTTTAAAA ACATTTCTCA AGATTACATA ATGAATGCAT GTTATTTTTC TATTATAAGC
  TTTATAAATA AAGGTGCTAA AATATAAAAC TCTAATATGC ACATATAAAT CTGTTTCTTT
  GTAAGATGTT TGTAGTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50936259	NES14269350	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs37787339					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50936259	NES14269350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:125143143 () rs orientation: forward

Symbol	Name	Function Class
Gm45604	predicted gene 45604	1595 bp upstream
Slc16a7	solute carrier family 16 (monocarboxylic acid transporters), member 7	within coordinates
Tssr96086	transcription start site region 96086	1694 bp upstream
Tssr96087	transcription start site region 96087	1722 bp upstream
Tssr99673	transcription start site region 99673	1518 bp downstream
Tssr99674	transcription start site region 99674	1531 bp downstream
Tssr99675	transcription start site region 99675	1535 bp downstream
Tssr99676	transcription start site region 99676	1569 bp downstream