rs37788971 SNP Detail

Summary

• ID
  rs37788971
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20367192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATTCTA GGCCATATAT
  TTGGCTGTGG ATCTCTTGGG TTGAAGTGAT TTGGTACTGA TAGGGTTTGT GTTGTGAGTG
  TCCTCGGGTA TTCAAGCAGG GCGGAGACCA TGCAGAGCCA GCCCCATCCT TAGCTTACTT
  TGGTGCAGAA TGGGGAGCTG GAGTTATTTT ATAAGGTCAT ATTGTTTTCA GCTTTGAGCG
  S
  TTTTAAACAC AAGGAAGACT TAGTATTGTT TTAATAATCA TGTCTTCAGG ATATCATCCT
  AGAAGAATTA AACTTACTGG AACATAATGC AAGCCATCAG GGCTTTTAAC ACAGCTGGCT
  GAAGGCCTTC TAAACAGCTG TACAGGAACA GGTACTTCTT GCCTGGAGAG TGTGGGCAAG
  GAACCAACTG CTCCCTGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51076155	NES14368783	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37788971					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076155	NES14368783	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20367192 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	809 bp proximal
Rr270988	regulatory region 270988	1809 bp proximal
Rr281054	regulatory region 281054	1208 bp proximal
Tssr118580	transcription start site region 118580	1918 bp upstream
Tssr118581	transcription start site region 118581	1976 bp upstream