rs37789494 SNP Detail

Summary

• ID
  rs37789494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91733577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCCTGAACTT CTTTGACAAA TGTACACATT TTTTCCTGTC TCCAAAGCAA
  Y
  GTACTCTGCC AAGTGACCCT CTAATCCTCT TCCAGTGGCT GTTGACTCAG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51366829	NES13739718	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37789494					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366829	NES13739718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91733577 () rs orientation: forward

Symbol	Name	Function Class
Rr379752	regulatory region 379752	within coordinates
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	within coordinates
Tssr1939	transcription start site region 1939	521 bp upstream
Tssr57746	transcription start site region 57746	1616 bp downstream
Tssr57747	transcription start site region 57747	1422 bp downstream
Tssr57748	transcription start site region 57748	579 bp downstream
Tssr57749	transcription start site region 57749	439 bp downstream
Tssr57750	transcription start site region 57750	76 bp downstream
Tssr57751	transcription start site region 57751	within coordinates
Tssr57752	transcription start site region 57752	387 bp upstream
Tssr57753	transcription start site region 57753	1223 bp upstream
Tssr57754	transcription start site region 57754	1322 bp upstream
Tssr57755	transcription start site region 57755	1413 bp upstream
Tssr57756	transcription start site region 57756	1446 bp upstream
Tssr57757	transcription start site region 57757	1483 bp upstream
Tssr57758	transcription start site region 57758	1514 bp upstream
Tssr57759	transcription start site region 57759	1739 bp upstream
Tssr57760	transcription start site region 57760	1795 bp upstream
Tssr57761	transcription start site region 57761	1812 bp upstream
Tssr57762	transcription start site region 57762	1840 bp upstream
Tssr57763	transcription start site region 57763	1867 bp upstream
Tssr57764	transcription start site region 57764	1892 bp upstream
Tssr57765	transcription start site region 57765	1932 bp upstream
Tssr57766	transcription start site region 57766	1954 bp upstream
Tssr62094	transcription start site region 62094	1359 bp upstream
Tssr62095	transcription start site region 62095	1730 bp downstream