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rs37789961 SNP Detail
Summary
  • ID
    rs37789961
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:48590385 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AGAATCTCAC TGTGGGCACC AGGACTTTGA AGGTCACCCA
    AAGGATAAAA CAAGGACATT AATGTTGGGA GGAAAAAAAA AAGCAAAGCC AGGCTATAGA
    R
    GTATGCAGCA GGCCGGGTAA AATCGGGGTG CTTTTGGTGC TGGAACTGGG GCTGAAGACT
    GGCTGGTCAG GTCTGGAGAA TGAGCTCTCT GGGTAGGAT                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss51306571 NES13769679 PERLEGEN MM_PANEL2 f SNP A G G A A A G G A G G
ss133165048 ENSMUSSNP768225 ENSEMBL ENSEMBL_Sanger f SNP A G G
ss321794033 CHEV_6_48563450 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs37789961 SNP A A G G A A G A G G G A G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51306571 NES13769679 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:48590385 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm38804 predicted gene, 38804 within coordinates
Gm44965 predicted gene 44965 within coordinates
Gm45021 predicted gene 45021 201 bp downstream
Gm67224 predicted gene, 67224 within coordinates
Rr135555 regulatory region 135555 216 bp proximal
Tssr60741 transcription start site region 60741 287 bp downstream
Tssr60742 transcription start site region 60742 298 bp downstream
Zfp775 zinc finger protein 775 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory