rs37790968 SNP Detail

Summary

• ID
  rs37790968
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187993550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCCTAT AAATTTGCTG
  TCTTTACACT AACATTCTGT TCTTAAAATT TTCCACCTAA ATAAAGCACT GAGCCAAGGA
  TGGGGTTTTG ACCAAAGGCG ACACAATCGA ATGCTACAAT GTTCTCAGGG GCAAGAAAGG
  AAAGACGACC TGGAAACAGA GAATCAGGAG TTTTCTCTAG TTGCCTTTTA ATGAGAAACA
  M
  CTTAGAAGCA TCTCCTTCTT CTCAAGATTG CTGTAACTCT AAGAGTTTAT AGCGAACAAA
  TTAACTCTTG GCTTTCCAGA CCATCTTACA CTTTTTTAAA AGATGAGGCT GACAGGTTAC
  AAAGACTGTT GAAATCTTAG AATATTTTAA TGTAGGATGG CATAATCCAG AGGACAGAAA
  TGACAACTTT GGATGTATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51416348	NES14451668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37790968					SNP	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51416348	NES14451668	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187993550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	1864 bp proximal
Rr425684	regulatory region 425684	404 bp distal
Rr425685	regulatory region 425685	642 bp distal
Tssr368	transcription start site region 368	1546 bp upstream
Tssr10680	transcription start site region 10680	628 bp upstream
Tssr10681	transcription start site region 10681	664 bp upstream
Ush2a	usherin	1485 bp upstream