rs37792879 SNP Detail

Summary

• ID
  rs37792879
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55239662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTTAAC AGACCATCAG
  TGGCTAGCTA CCCATTGGCC AGTGGGACAG CATTACAGAA GGACCAAACA CAGAGCTGGA
  CATCTGTGAC CCTGCCTCAG GCCTAGGTTG TCTGCTACCT GATTATAAGG TTTTAGTGTC
  CTCTTGAATA GGGCTCATTG TCCTCTCCTG AGAAGTAAAA TCTTGCCTGG CCTACAGAGC
  S
  TCTTATCTCT ATGATGATAC CTTTGTGGTC TTAATGATTT AGTAACAGTG TAGTGATGCG
  CACCTTCCAC ATGGATAGAA GGAAGAAGAT AGGCTGAGTC ATGAGGCAAC AGCCTCTGGT
  GTCTCACTAG GGGCCAGTAG GGCTGCCTGG TCCCATCACC CCACACTCTC TGGCACTTTG
  ACTTGTCTTT TGACTCACGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51221532	NES14297439	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37792879					SNP	C	C	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221532	NES14297439	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55239662 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	636 bp upstream
Rr363563	regulatory region 363563	538 bp proximal
Rr363564	regulatory region 363564	1738 bp proximal
Tssr5558	transcription start site region 5558	604 bp upstream
Tssr157068	transcription start site region 157068	668 bp upstream
Tssr157069	transcription start site region 157069	695 bp upstream
Tssr157070	transcription start site region 157070	722 bp upstream