rs37794234 SNP Detail

Summary

• ID
  rs37794234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30512107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTTCA ATACTCTTTT
  CTGGCCTTAT CTCCAAATAC AAGATGGGAC TGAAGGTGTC AACATTAAAG TTTAGGGAAC
  ACTCAGTGTG GTCTGGAAGG CACTAGAACT GTGTGTGTTA ATTTACAATG GTGTGGTACA
  CATTGAAAAA GAGAGAGAGA CTGGTGAAAA CCAAGACCTT GAACACTTAA AGAGATGGCA
  R
  TAAAGGATAA GGACATTTCA ACCTCGGTCG CAGAAGGAAG TATATTGAGA AATACCATCA
  ACTCTCTTAG AGGTCCTCTA GATAGATCTG CCCATCTAAG GCATCTAAGA ACATGTATCA
  GTACCTGCAA CAGTAGCTTA AGTCTATGTC ATAATTGGTT GCCAGGGAAG TTGTCCTAGG
  TCACGGAGGG AAATCGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51572145	NES14860666	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37794234					SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51572145	NES14860666	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30512107 () rs orientation: forward

Symbol	Name	Function Class
Rr134712	regulatory region 134712	1507 bp distal
Rr146079	regulatory region 146079	1506 bp distal
Rr148899	regulatory region 148899	1495 bp proximal
Rr379134	regulatory region 379134	1407 bp downstream
Ssmem1	serine-rich single-pass membrane protein 1	within coordinates
Tssr55343	transcription start site region 55343	175 bp upstream
Tssr55344	transcription start site region 55344	186 bp upstream
Tssr55345	transcription start site region 55345	214 bp upstream
Tssr55346	transcription start site region 55346	232 bp upstream