rs37794470 SNP Detail

Summary

• ID
  rs37794470
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123829598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC CTGCAGGCGC AAGGCCCGGC
  W
  GGCGAAAGCG CGTCGCATCG CCCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50631637	NES14029297	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T	A	A	A	A		A	A	A	A		A
ss145824478	ENSMUSSNP2216537	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss322854280	CHEV_8_125626759	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37794470					SNP	A	T	T	T	T	A	T	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50631637	NES14029297	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123829598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	within coordinates
Rpl13	ribosomal protein L13	within coordinates
Rr382749	regulatory region 382749	1844 bp downstream
Rr672354	regulatory region 672354	1397 bp distal
Rr672355	regulatory region 672355	499 bp distal
Snord68	small nucleolar RNA, C/D box 68	199 bp upstream
Tssr79911	transcription start site region 79911	508 bp downstream
Tssr79912	transcription start site region 79912	439 bp downstream
Tssr79913	transcription start site region 79913	405 bp downstream
Tssr83335	transcription start site region 83335	579 bp upstream