rs37795924 SNP Detail

Summary

• ID
  rs37795924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:38219833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCTGTG TGAAGTTATC
  ATGGGTGAAT ATTGCCCGAA ATTTGTCAGA TTCACCCCAC CGTTTAAATT ATGAATCAAG
  TTTTGGGTGT GGAGAATTTA TCATGACTCT CCCCACCCCA TTATGGGGCC ATGATCTTTA
  GTTAAGAAAC TCTGGTCTAC ACAGTTAAAA CACAGGCTGA AAATACCCCC CATTCTAGTG
  R
  CATATTATCA GATTGTCTCA GTCTATCCTT AGTACCTGTC TGCCTGGATG ACTTTGTTAG
  ATTACTTATT TACTGAAGAC GTTTTCAAAT CGATGTCATC ATTTGGTAAA CTGTAAAAAA
  CCAAGTAGGC TAAGGAAGCT AGGCAGGGCT GCTGGAGGAC TCAACCTTGG GCTCACCTTT
  CCCGTCCTGC AAATAAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51098405	NES14356934	PERLEGEN	MM_PANEL2	f	SNP			A	G	G	G	G	G	G	G
ss148892284	ENSMUSSNP2393703	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37795924					SNP	A	A	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51098405	NES14356934	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38219833 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cage1	cancer antigen 1			Intron
				Noncoding-Transcript-Variant
Cpgi5461	CpG island 5461			747 bp proximal
Riok1	RIO kinase 1			1138 bp upstream
Rr369679	regulatory region 369679			1489 bp upstream
Rr477625	regulatory region 477625			598 bp proximal
Rr477626	regulatory region 477626			1056 bp proximal
Rr477627	regulatory region 477627			1202 bp proximal
Tssr119342	transcription start site region 119342			1378 bp upstream
Tssr122123	transcription start site region 122123			1033 bp downstream
Tssr122124	transcription start site region 122124			1068 bp downstream
Tssr122125	transcription start site region 122125			1226 bp downstream
Tssr122126	transcription start site region 122126			1308 bp downstream